In applied mathematics, the nonuniform discrete fourier transform nudft or ndft of a signal is a type of fourier transform, related to a discrete fourier. In this paper, we propose a nufft that is embarrassingly parallelizable. The fast fourier transform fft is used ubiquitously in signal. Following the idea of fast interpolation for the nonuniform fast fourier transform nufft algorithms 48, in this work we develop. The regular fourier matrices and nonuniform fast fourier transforms article pdf available in siam journal on scientific computing 211 september 1999 with 324 reads how we measure reads. A generalization of the dft, introduced in this chapter, is the nonuniform discrete fourier transform ndft, which can be used to obtain frequency domain information of a finitelength signal at arbitrarily chosen frequency points. Several papers have described fast approximations for the nonuniform ft based on interpolating an.
In order to improve the performance of alignment, we introduce a new method that takes advantage of the highly accurate interpolation scheme based on the gridding method, a version of the nonuniform fast fourier transform, and utilizes a multidimensional optimization algorithm for the refinement of the orientation parameters. Accelerating the nonuniform fast fourier transform pdf. Jan 17, 2017 our algorithm is simple to implement, automatically adapts to any working precision, and is competitive with stateoftheart algorithms. Nonuniform fourier data are routinely collected in applications such as magnetic resonance imaging, synthetic aperture radar, and synthetic imaging in radio astronomy. The chebyshev fast gauss and nonuniform fast fourier transforms and their application to the evaluation of distributed heat potentials. Nonuniform fast fourier transform nufft dates back to the 90s 1, 2. Accelerating the nonuniform fast fourier transform nyu courant. We develop the concept of the nonuniform discrete fourier transform ndft in this chapter. A svdbased algorithm for dense nonuniform fast fourier. However, in many applications, one requires nonuniform sampling in the frequency domain, i. Highspeed spectral domain optical coherence tomography using. Pdf accelerating the nonuniform fast fourier transform. Scaled diffraction calculation between tilted planes using.
The nonuniform fast fourier transform nufft is a generalization of fft to nonequidistant samples. Nonuniform fourier transform this is still not an improvement compared to direct computation for each. Nd nonuniform fast fourier transform matlab nufftn. By viewing the nonuniform discrete fourier transform nudft as a perturbed version of a uniform discrete fourier transform, we propose a fast and quasioptimal algorithm for computing the nudft based on the fast fourier transform fft. Fourier transforms and the fast fourier transform fft. Additionally, all three types of nonuniform fast fourier transforms are available, as well as the padua transform. In this section, we briefly introduce the nonuniform fast fourier transform nufft. In such cases the transformation is referred as nonuniform fourier transform and its fast implementation as nonuniform fast fourier transform nufft. Develop a fast method to calculate discrete fourier transform dft of nonuniformly sampled data regular fft algorithms do not apply straightforward dft requires on2for the forward transform, and on3for the inverse transform develop a fast fourier transform algorithm for discontinuous functions. Nonuniform fast fourier transforms using minmax interpolation. Pdf the regular fourier matrices and nonuniform fast. Nonuniform fast fourier transform nufft for reconstruction of cryoelectron tomograms we implemented infr.
In previous works 35 nufft is implemented by means of interpolation, i. A brief introduction to the fourier transform this document is an introduction to the fourier transform. We investigate the properties of the ndft in section 2. As a result, we can easily implement the fft algorithm in the calculation of nonequispaced fourier transform which can improve the computation speed evidently. Non uniform fast fourier transform nufft dates back to the 90s 1, 2. Highspeed spectral domain optical coherence tomography. This matlab function returns the nonuniform discrete fourier transform nudft along each dimension of an nd array x using the sample points t. A method of diffraction calculation between tilted planes with variable sampling rates is proposed. The level is intended for physics undergraduates in their 2nd or 3rd year of studies. Sep 19, 2003 fast fourier transforms for nonequispaced data, ii. Pdf nonuniform fast fourier transforms using minmax. To acquire a fast reconstruction that does not require an online inverse process, the nonuniform fast fourier transform nfft, also called convolutional gridding, is frequently. Iterative reconstruction of cryoelectron tomograms using. We provide an introduction to the ndft and discuss its applications in the design of 1d and 2d fir digital filters.
Fourier transforms and the fast fourier transform fft algorithm. The fast fourier transform fft is used widely in signal processing for efficient computation of the ft of finitelength signals over a set of uniformly spaced frequency locations. Availability of specialpurpose hardware in both the com mercial and military sectors has led to sophisticated signalprocessing sys tems based on the features of the fft. Such problems require a nonuniform fourier transform 16, yet one would like to retain the computational advantages of fast algorithms like the fft, rather than resorting to bruteforce evaluation of the nonuniform ft. We also describe quasioptimal algorithms for the inverse nudft and twodimensional nudfts. The conventional fft requires that both input and output grids are equally spaced grid.
Processing sdoct data with the nonuniform fast fourier transform nfft can improve the sensitivity falloff at maximum depth by greater than 5db concurrently with a 30 fold decrease in processing time compared to the fast fourier transform with. A nonuniform fast fourier transform based on low rank. Definition of nonuniform discrete fourier transform ndft. Nonuniform fast fourier transforms arizona state university. Transform, the radon transform and the contourlet transform 2. Unfortunately, the direct summation of the nonuniform discrete cosine transform nudct costs on2 arithmetic operations, where n is the number of sample points.
Sutton, member, ieee abstract the fast fourier transform fft is used widely in signal processing for efficient computation of the ft of finitelength signals over a set of uniformly spaced frequency locations. Chan and shuo tang department of electrical and computer engineering, university of. If we can perform the reconstruction process or forward projection process of the image in the fourier domain, the computational efficiency of the fast fourier transform fft can be utilized to develop fast forward and backward cone beam ct. To acquire a fast reconstruction that does not require an online inverse process, the nonuniform fast fourier transform nfft, also called convolutional gridding, is frequently employed. Fourier transforms and the fast fourier transform fft algorithm paul heckbert feb. Nonuniform discrete fourier transform of vector for a vector x of length n, sample points t, and frequencies f, the nonuniform discrete fourier transform of x is defined as y k. The proposed method is based on the fourier spectrum rotation from a tilted plane to a parallel plane. In the following, we explain the method and our specific implementation. A svdbased algorithm for dense nonuniform fast fourier transform. Cryoem image alignment based on nonuniform fast fourier.
It has many applications which vary from medical imaging to radio astronomy to the numerical. This geometric nonuniform fast fourier transform gnufft delivers performance comparable to specialized nonuniform fft techniques, for point data sets, and essentially optimal performance for general geometric data. On the use of hahns asymptotic formula and stabilized recurrence for a fast, simple, and stable chebyshevjacobi transform, ima j. In the general case, the definition of the nonuniform discrete fourier transform ndft is the same as the one given by equation 3, taking into consideration that the samples can the taken at irregular intervals both in time andor in frequency. A parallel nonuniform fast fourier transform library based on an.
This requirement is met in many scientific and technical applications, but it is not unusual that the input or the output grid is. Veerapaneni george biros march 14, 2007 abstract we present a method for the fast and accurate computation of distributed or volume heat potentials in two dimensions. Nonuniform fast fourier transformation of sprite mri data. Finufft is a set of libraries to compute efficiently three types of nonuniform fast fourier transform nufft to a specified precision, in one, two, or three dimensions, on a multicore sharedmemory machine. In the fully uniform case, our algorithm is essentially the fft. Flatiron institute nonuniform fast fourier transform. The nonuniform fast fourier transform nufft generalizes the fft to off. A geometric nonuniform fast fourier transform sciencedirect. The nonuniform fast fourier transform in computed tomography. In contrast, the direct fourier transform has a complexity of on2, which makes it too slow for processing datasets containing more than a few thousand samples. Nonuniform discrete fourier transform of vector for a vector x of length n, sample points t, and frequencies f, the nonuniform discrete fourier transform of x.
Citeseerx document details isaac councill, lee giles, pradeep teregowda. The regular fourier matrices and nonuniform fast fourier transforms. Highspeed spectral domain optical coherence tomography using nonuniform fast fourier transform. There are a host of applications of such algorithms, and we refer the reader to the references 2, 6, 8, 11, 14, 17 for examples. Following dutt and rokhlin 2, we refer to this as a type 1 transform. Like the fast fourier transform fft for equispaced.
Processing sdoct data with the nonuniform fast fourier transform nfft can improve the sensitivity falloff. Pdf accelerating the nonuniform fast fourier transform pdf. Various methods for computing the ndft are discussed in section 2. The nonuniform fast fourier transformation nufft is used to calculate the nonuniform sampled fourier spectrum on the tilted plane with variable sampling rates, which overcomes the sampling. Feb 08, 2020 a nonuniform fast fourier transform based on low rank approximation, arxiv. Accelerating the nonuniform fast fourier transform siam. Lecture 11 february 9, 2016 1 outline 2 introduction to non. A frame theoretic approach to the nonuniform fast anne gelb resonance imaging,synthetic apertureradar,and synthetic imaginginradioastronomy. If we can perform the reconstruction process or forward projection process of the image in the fourier domain, the computational efficiency of the fast fourier transform fft can be utilized to develop fast forward and backward cone beam ct operators. The useful imaging range in spectral domain optical coherence tomography sdoct is often limited by the depth dependent sensitivity falloff. Nonuniform fast fourier transforms using minmax interpolation jeffrey a. The nonuniform discrete fourier transform springerlink. The chebyshev fast gauss and nonuniform fast fourier.
The fast fourier transform fft is a widely used signalprocessing and analysis concept. Ni is the number of modes in dimension i, following their examples. An algorithm for the machine calculation of complex fourier series. According to a distinction of the inputoutput objects, there are three main types of nonuniform discrete fourier transform.
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